Bioinformatics Library for Integrated Tools

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Documentation for package ‘blit’ version 0.2.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

allele_counter	Run alleleCount
appmamba	Manage Environment with 'micromamba'
appmamba_rc	Manage Environment with 'micromamba'
arg	Deliver arguments of command
arg0	Deliver arguments of command
cellranger	Run cellranger
cmd_background	Execute command
cmd_conda	Setup the context for the command
cmd_envpath	Setup the context for the command
cmd_envvar	Setup the context for the command
cmd_help	Execute command
cmd_on_exit	Schedule expressions to run
cmd_on_fail	Schedule expressions to run
cmd_on_start	Schedule expressions to run
cmd_on_succeed	Schedule expressions to run
cmd_parallel	Execute a list of commands
cmd_run	Execute command
cmd_wd	Setup the context for the command
Command	R6 Class to prepare command parameters.
conda	Run conda
exec	Invoke a System Command
fastq_pair	FASTQ PAIR
fastq_read_pair	FASTQ PAIR
gistic2	Run GISTIC2
install_appmamba	Manage Environment with 'micromamba'
kraken2	Running Kraken2
kraken_tools	KrakenTools is a suite of scripts to be used alongside the Kraken, KrakenUniq, Kraken 2, or Bracken programs.
make_command	Helper function to create new command.
perl	Perl is a highly capable, feature-rich programming language with over 36 years of development.
pyscenic	Run pyscenic
python	Python is a programming language that lets you work quickly and integrate systems more effectively.
samtools	Python is a programming language that lets you work quickly and integrate systems more effectively.
seqkit	Run seqkit
trust4	TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data
trust4_gene_names	TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data
trust4_imgt_annot	TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data
uninstall_appmamba	Manage Environment with 'micromamba'