Cytobank API Wrapper for R

---

Documentation for package ‘CytobankAPI’ version 2.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

A C D E F G H N O P S T U V

-- A --

AdvancedAnalysis-class	S4 Advanced Analysis Class
attachments	Attachment Endpoints
attachments.delete	Attachment Endpoints
attachments.delete-method	Attachment Endpoints
attachments.download	Attachment Endpoints
attachments.download-method	Attachment Endpoints
attachments.download_zip	Attachment Endpoints
attachments.download_zip-method	Attachment Endpoints
attachments.list	Attachment Endpoints
attachments.list-method	Attachment Endpoints
attachments.show	Attachment Endpoints
attachments.show-method	Attachment Endpoints
attachments.update	Attachment Endpoints
attachments.update-method	Attachment Endpoints
attachments.upload	Attachment Endpoints
attachments.upload-method	Attachment Endpoints
authenticate	Authentication Endpoints
authentication	Authentication Endpoints
authentication.logout	Authentication Endpoints
authentication.logout-method	Authentication Endpoints
authentication.revoke_all_tokens	Authentication Endpoints
authentication.revoke_all_tokens-method	Authentication Endpoints
authentication.revoke_all_tokens_user	Authentication Endpoints
authentication.revoke_all_tokens_user-method	Authentication Endpoints
autogating	Automatic gating Endpoints
autogating.copy_autogating_analysis_settings	Automatic gating Endpoints
autogating.copy_autogating_analysis_settings-method	Automatic gating Endpoints
autogating.create_autogating_analysis	Automatic gating Endpoints
autogating.create_autogating_analysis-method	Automatic gating Endpoints
autogating.delete_autogating_analysis	Automatic gating Endpoints
autogating.delete_autogating_analysis-method	Automatic gating Endpoints
autogating.list_autogating_analyses_of_type	Automatic gating Endpoints
autogating.list_autogating_analyses_of_type-method	Automatic gating Endpoints
autogating.rename_autogating_analysis	Automatic gating Endpoints
autogating.rename_autogating_analysis-method	Automatic gating Endpoints
autogating.run_autogating_analysis	Automatic gating Endpoints
autogating.run_autogating_analysis-method	Automatic gating Endpoints
autogating.show_autogating_analysis_details	Automatic gating Endpoints
autogating.show_autogating_analysis_details-method	Automatic gating Endpoints
autogating.show_autogating_analysis_status	Automatic gating Endpoints
autogating.show_autogating_analysis_status-method	Automatic gating Endpoints
autogating.update_autogating_inference_analysis_details	Automatic gating Endpoints
autogating.update_autogating_inference_analysis_details-method	Automatic gating Endpoints
autogating.update_autogating_training_analysis_details	Automatic gating Endpoints
autogating.update_autogating_training_analysis_details-method	Automatic gating Endpoints

-- C --

citrus	CITRUS Endpoints
CITRUS-class	S4 CITRUS Class
citrus.copy_settings	CITRUS Endpoints
citrus.copy_settings-method	CITRUS Endpoints
citrus.delete	CITRUS Endpoints
citrus.delete-method	CITRUS Endpoints
citrus.download	CITRUS Endpoints
citrus.download-method	CITRUS Endpoints
citrus.list	CITRUS Endpoints
citrus.list-method	CITRUS Endpoints
citrus.new	CITRUS Endpoints
citrus.new-method	CITRUS Endpoints
citrus.rename	CITRUS Endpoints
citrus.rename-method	CITRUS Endpoints
citrus.run	CITRUS Endpoints
citrus.run-method	CITRUS Endpoints
citrus.show	CITRUS Endpoints
citrus.show-method	CITRUS Endpoints
citrus.status	CITRUS Endpoints
citrus.status-method	CITRUS Endpoints
citrus.update	CITRUS Endpoints
citrus.update-method	CITRUS Endpoints
compensations	Compensation Endpoints
compensations.list	Compensation Endpoints
compensations.list-method	Compensation Endpoints
compensations.show	Compensation Endpoints
compensations.show-method	Compensation Endpoints
compensations.upload_csv	Compensation Endpoints
compensations.upload_csv-method	Compensation Endpoints
CytobankAPI_news	News

-- D --

DimensionalityReduction-class	S4 DimensionalityReduction Class
dimensionality_reduction	DimensionalityReduction Endpoints
dimensionality_reduction.copy_settings	DimensionalityReduction Endpoints
dimensionality_reduction.copy_settings-method	DimensionalityReduction Endpoints
dimensionality_reduction.delete	DimensionalityReduction Endpoints
dimensionality_reduction.delete-method	DimensionalityReduction Endpoints
dimensionality_reduction.list	DimensionalityReduction Endpoints
dimensionality_reduction.list-method	DimensionalityReduction Endpoints
dimensionality_reduction.new	DimensionalityReduction Endpoints
dimensionality_reduction.new-method	DimensionalityReduction Endpoints
dimensionality_reduction.rename	DimensionalityReduction Endpoints
dimensionality_reduction.rename-method	DimensionalityReduction Endpoints
dimensionality_reduction.run	DimensionalityReduction Endpoints
dimensionality_reduction.run-method	DimensionalityReduction Endpoints
dimensionality_reduction.show	DimensionalityReduction Endpoints
dimensionality_reduction.show-method	DimensionalityReduction Endpoints
dimensionality_reduction.status	DimensionalityReduction Endpoints
dimensionality_reduction.status-method	DimensionalityReduction Endpoints
dimensionality_reduction.update	DimensionalityReduction Endpoints
dimensionality_reduction.update-method	DimensionalityReduction Endpoints
drop	DROP File Endpoints
drop.upload	DROP File Endpoints
drop.upload-method	DROP File Endpoints

-- E --

experiments	Experiment Endpoints
experiments.clone_full	Experiment Endpoints
experiments.clone_full-method	Experiment Endpoints
experiments.clone_selective	Experiment Endpoints
experiments.clone_selective-method	Experiment Endpoints
experiments.delete	Experiment Endpoints
experiments.delete-method	Experiment Endpoints
experiments.full_access_users_add	Experiment Endpoints
experiments.full_access_users_add-method	Experiment Endpoints
experiments.full_access_users_list	Experiment Endpoints
experiments.full_access_users_list-method	Experiment Endpoints
experiments.full_access_users_remove	Experiment Endpoints
experiments.full_access_users_remove-method	Experiment Endpoints
experiments.list	Experiment Endpoints
experiments.list-method	Experiment Endpoints
experiments.new	Experiment Endpoints
experiments.new-method	Experiment Endpoints
experiments.show	Experiment Endpoints
experiments.show-method	Experiment Endpoints
experiments.trash	Experiment Endpoints
experiments.trash-method	Experiment Endpoints
experiments.update	Experiment Endpoints
experiments.update-method	Experiment Endpoints

-- F --

fcs_files	FCS File Endpoints
fcs_files.download	FCS File Endpoints
fcs_files.download-method	FCS File Endpoints
fcs_files.download_zip	FCS File Endpoints
fcs_files.download_zip-method	FCS File Endpoints
fcs_files.file_internal_comp_show	FCS File Endpoints
fcs_files.file_internal_comp_show-method	FCS File Endpoints
fcs_files.list	FCS File Endpoints
fcs_files.list-method	FCS File Endpoints
fcs_files.show	FCS File Endpoints
fcs_files.show-method	FCS File Endpoints
fcs_files.status	FCS File Endpoints
fcs_files.status-method	FCS File Endpoints
fcs_files.upload	FCS File Endpoints
fcs_files.upload-method	FCS File Endpoints
fcs_files.upload_zip	FCS File Endpoints
fcs_files.upload_zip-method	FCS File Endpoints
flowsom	FlowSOM Endpoints
FlowSOM-class	S4 FlowSOM Class
flowsom.copy_settings	FlowSOM Endpoints
flowsom.copy_settings-method	FlowSOM Endpoints
flowsom.delete	FlowSOM Endpoints
flowsom.delete-method	FlowSOM Endpoints
flowsom.download	FlowSOM Endpoints
flowsom.download-method	FlowSOM Endpoints
flowsom.list	FlowSOM Endpoints
flowsom.list-method	FlowSOM Endpoints
flowsom.new	FlowSOM Endpoints
flowsom.new-method	FlowSOM Endpoints
flowsom.rename	FlowSOM Endpoints
flowsom.rename-method	FlowSOM Endpoints
flowsom.run	FlowSOM Endpoints
flowsom.run-method	FlowSOM Endpoints
flowsom.show	FlowSOM Endpoints
flowsom.show-method	FlowSOM Endpoints
flowsom.status	FlowSOM Endpoints
flowsom.status-method	FlowSOM Endpoints
flowsom.update	FlowSOM Endpoints
flowsom.update-method	FlowSOM Endpoints

-- G --

gates	Gate Endpoints
gates.apply	Gate Endpoints
gates.apply-method	Gate Endpoints
gates.gatingML_download	Gate Endpoints
gates.gatingML_download-method	Gate Endpoints
gates.gatingML_upload	Gate Endpoints
gates.gatingML_upload-method	Gate Endpoints
gates.list	Gate Endpoints
gates.list-method	Gate Endpoints
gates.show	Gate Endpoints
gates.show-method	Gate Endpoints

-- H --

helper.channel_ids_from_long_names	Helper Functions
helper.filter_names_to_ids_from_df	Helper Functions
helper_functions	Helper Functions

-- N --

news

News

-- O --

optSNE-class

S4 opt-SNE Class

-- P --

panels	Panel Endpoints
panels.list	Panel Endpoints
panels.list-method	Panel Endpoints
panels.show	Panel Endpoints
panels.show-method	Panel Endpoints
peacoqc	PeacoQC Endpoints
PeacoQC-class	S4 PeacoQC Class
peacoqc.copy_settings	PeacoQC Endpoints
peacoqc.copy_settings-method	PeacoQC Endpoints
peacoqc.list	PeacoQC Endpoints
peacoqc.list-method	PeacoQC Endpoints
peacoqc.new	PeacoQC Endpoints
peacoqc.new-method	PeacoQC Endpoints
peacoqc.rename	PeacoQC Endpoints
peacoqc.rename-method	PeacoQC Endpoints
peacoqc.run	PeacoQC Endpoints
peacoqc.run-method	PeacoQC Endpoints
peacoqc.show	PeacoQC Endpoints
peacoqc.show-method	PeacoQC Endpoints
peacoqc.status	PeacoQC Endpoints
peacoqc.status-method	PeacoQC Endpoints
peacoqc.update	PeacoQC Endpoints
peacoqc.update-method	PeacoQC Endpoints
populations	Population Endpoints
populations.list	Population Endpoints
populations.list-method	Population Endpoints
populations.show	Population Endpoints
populations.show-method	Population Endpoints

-- S --

sample_tags	Sample Tag Endpoints
sample_tags.download	Sample Tag Endpoints
sample_tags.download-method	Sample Tag Endpoints
sample_tags.upload	Sample Tag Endpoints
sample_tags.upload-method	Sample Tag Endpoints
scales	Scale Endpoints
scales.list	Scale Endpoints
scales.list-method	Scale Endpoints
scales.show	Scale Endpoints
scales.show-method	Scale Endpoints
scales.update	Scale Endpoints
scales.update-method	Scale Endpoints
spade	SPADE Endpoints
SPADE-class	S4 SPADE Class
spade.bubbles_export	SPADE Endpoints
spade.bubbles_export-method	SPADE Endpoints
spade.bubbles_set	SPADE Endpoints
spade.bubbles_set-method	SPADE Endpoints
spade.bubbles_show	SPADE Endpoints
spade.bubbles_show-method	SPADE Endpoints
spade.copy_results	SPADE Endpoints
spade.copy_results-method	SPADE Endpoints
spade.copy_settings	SPADE Endpoints
spade.copy_settings-method	SPADE Endpoints
spade.delete	SPADE Endpoints
spade.delete-method	SPADE Endpoints
spade.download_all	SPADE Endpoints
spade.download_all-method	SPADE Endpoints
spade.download_clusters_table	SPADE Endpoints
spade.download_clusters_table-method	SPADE Endpoints
spade.download_global_boundaries_table	SPADE Endpoints
spade.download_global_boundaries_table-method	SPADE Endpoints
spade.download_gml	SPADE Endpoints
spade.download_gml-method	SPADE Endpoints
spade.download_layout_table	SPADE Endpoints
spade.download_layout_table-method	SPADE Endpoints
spade.download_statistics_tables	SPADE Endpoints
spade.download_statistics_tables-method	SPADE Endpoints
spade.list	SPADE Endpoints
spade.list-method	SPADE Endpoints
spade.new	SPADE Endpoints
spade.new-method	SPADE Endpoints
spade.rename	SPADE Endpoints
spade.rename-method	SPADE Endpoints
spade.run	SPADE Endpoints
spade.run-method	SPADE Endpoints
spade.show	SPADE Endpoints
spade.show-method	SPADE Endpoints
spade.status	SPADE Endpoints
spade.status-method	SPADE Endpoints
spade.update	SPADE Endpoints
spade.update-method	SPADE Endpoints
statistics	Statistic Endpoints
statistics.event_counts	Statistic Endpoints
statistics.event_counts-method	Statistic Endpoints
statistics.general	Statistic Endpoints
statistics.general-method	Statistic Endpoints

-- T --

tSNE-class

S4 tSNE Class

-- U --

UMAP-class	S4 UMAP Class
users	User Endpoints
users.list	User Endpoints
users.list-method	User Endpoints
users.show	User Endpoints
users.show-method	User Endpoints
UserSession-class	S4 Cytobank UserSession Class

-- V --

visne	viSNE Endpoints
viSNE-class	S4 viSNE Class
visne.copy_settings	viSNE Endpoints
visne.copy_settings-method	viSNE Endpoints
visne.delete	viSNE Endpoints
visne.delete-method	viSNE Endpoints
visne.helper.set_populations	viSNE Endpoints
visne.list	viSNE Endpoints
visne.list-method	viSNE Endpoints
visne.new	viSNE Endpoints
visne.new-method	viSNE Endpoints
visne.rename	viSNE Endpoints
visne.rename-method	viSNE Endpoints
visne.run	viSNE Endpoints
visne.run-method	viSNE Endpoints
visne.show	viSNE Endpoints
visne.show-method	viSNE Endpoints
visne.status	viSNE Endpoints
visne.status-method	viSNE Endpoints
visne.update	viSNE Endpoints
visne.update-method	viSNE Endpoints