Optimized Rendering of Fold Changes and Confidence Values

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Documentation for package ‘colorpatch’ version 0.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Code demos. Use demo() to run them.
• Package NEWS.

Help Pages

colorpatch-package	A small introduction to the colorpatch package.
append-method	Appends two palettes to form a single palette.
apply.color	Applies a function to each entry of a colorspace::color palette.
as	Transforms palette to list of single colors.
as.list	Creates a list with single colors from a palette.
as.list-method	Creates a list with single colors from a palette.
ColorDistance	Computes the perceptional distance between two neighboring colors
colorpatch	A small introduction to the colorpatch package.
ColorPatchColorFun	Creates a color function mapping (ratio, conf) tuples to a single color
ColorPatchSizeFun	Creates a size function mapping (ratio, conf) to a single color
ColorRgbFun	Creates a color mapping function
ComputeSymmetry	Computes the symmetry of a given bi-variate color palette
CreateClusteredData	Creates clustered random data
CreateExampleData	Creates demonstration data of the colorpatch package
DistColor	Computes the distance of to colors within a certain colorspace
DistColorFun	Creates a color distance function
FindUniformSequence	Finds a uniform color sequence within a non-uniform palette by subsampling that palette
GeneratePalettes	Creates color palettes and saves them as files
GreenRedRGB	Standard RGB Green/Red two-sided color scale.
HsvColorFun	Creates a color function mapping ratio/conf values to a HSV colorspace
HsvSizeFun	Creates a size function mapping ratio/conf to a patch size for bicolorings
InterpolateColorFun	Linear interpolation within a colorspace::color palette
length-method	Returns the length of a palette (the number of entries).
LinColorSpace	Creates a linear color space between two colors
OptimBlueYellowLAB	Optimum RGB Blue/Yellow two-sided color scale in LAB color space.
OptimGreenRedLAB	Optimum RGB Green/Red two-sided color scale in LAB color space.
OptimizeBiColor	Optimizes a bicolor palette
OrderData	Orders rows and columns of data.
OrderDataHclust	Orders rows and column distances with 'stats::hclust()'
OrderDataTSP	Orders rows and column distances with traveling salesman ordering TSP
OrderWithTSP	Orders a data set given a distance matrix with TSP
PlotSymmetry	Plots the symmetry of a bivariate color scale
PlotUniformity	Plots the uniformity of a color palette
ReadArraySRGB	Reads a sRGB color table as CSV file
StatColorPatch	A ggplot2::ggproto class for showing color patches.
stat_bicolor	Plots a ratio/confidence plot using a bivariate colormap
stat_colorpatch	A stat function for the use with ggplot2
theme_colorpatch	A ggplot2 theme for rendering colorpatches (black background)
ToDataFrame	Transforms a ratio/conf data set to a ggplot dataframe