Automated Gene Identification for Post-GWAS and QTL Analysis
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Documentation for package ‘geneNR’ version 2.0.1
Help Pages
| geneQTL | Identifies Candidate Genes based on identified Quantitative Trati Loci (QTL) analysis |
| geneSNP | Identifies Candidate Genes based on identified Single Nucleotide Ploymorphisms (SNPs) from Genome Wide Association Stuides (GWAS) Analysis |
| geneSNPcustom | Identifies Candidate Genes based on identified Single Nucleotide Ploymorphisms (SNPs) from Genome Wide Association Stuides (GWAS) Analysis |
| import_hmp | Imports Hapmap genotypic data file |
| import_vcf | Imports VCF (Variant Call Format) data file |
| plot_SNP | Plot SNP Distribution on Chromosome Map |
| plot_summariseSNP | Plot SNP Distribution Across Chromosomes |
| sample_data_rice | Sample Data |
| sample_data_rice_qtl | Sample Data |
| sample_data_wheat | Sample Data |
| sample_data_wheat_custom | Sample Data |
| sample_data_wheat_qtl | Sample Data |
| summariseSNP | Distribution of SNPs Across Chromosomes |
| summariseSNP_vcf | Distribution of SNPs Across Chromosomes from VCF |