Package: SC.MEB
Type: Package
Title: Spatial Clustering with Hidden Markov Random Field using
        Empirical Bayes
Version: 1.1
Date: 2021-09-30
Authors@R: c(
    person("Yi", "Yang", email = "yygaosansiban@sina.com", role = c("aut", "cre")),
    person("Xingjie", "Shi", role = "aut"),
    person("Jin", "Liu", role = "aut"))
Description: Spatial clustering with hidden markov random field fitted via EM algorithm, details of which can be found in Yi Yang (2021) <doi:10.1101/2021.06.05.447181>. It is not only computationally efficient and scalable to the sample size increment, but also is capable of choosing the smoothness parameter and the number of clusters as well.
License: GPL-3
Depends: mclust,parallel,ggplot2, Matrix, R (>= 3.5)
Imports: Rcpp (>= 1.0.6), SingleCellExperiment, purrr,BiocSingular,
        SummarizedExperiment, scater, scran, S4Vectors
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 7.1.2
VignetteBuilder: knitr
Suggests: knitr, rmarkdown
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2021-10-06 14:54:38 UTC; yygao
Author: Yi Yang [aut, cre],
  Xingjie Shi [aut],
  Jin Liu [aut]
Maintainer: Yi Yang <yygaosansiban@sina.com>
Repository: CRAN
Date/Publication: 2021-10-08 08:40:21 UTC
Built: R 4.5.0; x86_64-apple-darwin20; 2025-01-28 02:58:18 UTC; unix
Archs: SC.MEB.so.dSYM
