Simulating and Analysing Transmission Chain Statistics Using Branching Process Models

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Documentation for package ‘epichains’ version 0.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

aggregate.epichains	Aggregate cases in <epichains> objects by "generation" or "time", if present
covid19_sa	COVID-19 Data Repository for South Africa
dborel	Density of the Borel distribution
head.epichains	'head' and 'tail' method for <epichains> class
likelihood	Estimate the log-likelihood/likelihood for observed branching processes
print.epichains	Print an <epichains> object
print.epichains_summary	Print an <epichains_summary> object
rborel	Generate random numbers from the Borel distribution
rgborel	Generate random numbers from a Gamma-Borel mixture distribution
simulate_chains	Simulate transmission chains
simulate_chain_stats	Simulate a vector of transmission chains statistics (sizes/lengths)
summary.epichains	Summary method for <epichains> class
summary.epichains_summary	Summary method for <epichains_summary> class
tail.epichains	'head' and 'tail' method for <epichains> class