| ALE | Generic function for Accumulated Local Effect (ALE) |
| ALE.gam | Create Accumulated Local Effects (ALE) for GAMs |
| bamV | Fit a GAM model and get a gamViz object |
| check.gamViz | Some diagnostics for a fitted gam model |
| check0D | Checking GAM simulated residuals or responses |
| check1D | Checking GAM residuals or responses along one covariate |
| check2D | Checking GAM residuals along two covariates |
| fix.family.cdf | Getting the CDF of a gam family |
| gamm4V | Fit a GAMM or GAMM4 model and get a gamViz object |
| gammV | Fit a GAMM or GAMM4 model and get a gamViz object |
| gamV | Fit a GAM model and get a gamViz object |
| getGam | Convert gamViz object to gamObject |
| getViz | Converting gam objects to gamViz objects |
| gridPrint | Plotting plotSmooth objects on a grid |
| listLayers | Lists available layers for plotSmooth objects |
| l_bound | Add boundaries to smooth effect plot |
| l_ciBar | Adding confidence intervals to barplots |
| l_ciLine | Adding confidence intervals to effect plot |
| l_ciPoly | Adding confidence band to effect plots |
| l_clusterLine | Cluster and plot smooth effects |
| l_coordContour | Adding coordinate lines |
| l_dens | Adding density estimate heatmap |
| l_dens1D | Adding density estimate to a plot |
| l_dens2D | Adding density estimate heatmap |
| l_densCheck | Checking residuals conditional density |
| l_fitBar | Adding barplot to effect plots |
| l_fitContour | Adding fitted effect contour lines |
| l_fitDens | Adding density strip of fitted effect |
| l_fitLine | Add fitted smooth effect curve |
| l_fitPoints | Adding points representing the fitted effect |
| l_fitRaster | Adding raster representing the fitted effect |
| l_glyphs2D | Adding glyphs to 2D plots |
| l_gridCheck1D | Binning and checking GAM residuals |
| l_gridCheck2D | Binning and checking GAM residuals |
| l_gridQCheck1D | Checking sign of residuals along one covariate |
| l_gridQCheck2D | Binning and checking QGAM residuals |
| l_hist | Adding histogram to a plot |
| l_points | Add points to plot |
| l_poly | Add polygons to effect plots |
| l_pvContour | Adding contour of p-values |
| l_pvRaster | Adding raster or heat-map of p-values |
| l_rug | Adding rug to margins of a plot |
| l_simLine | Add simulated smooth effect curves |
| l_vline | Adding vertical line to a plot |
| mqgamV | Fit multiple QGAM models and get a mgamViz object |
| plot.ALE1D | Plot 1D Accumulated Local Effects (ALE) |
| plot.fs.interaction.1D | Plotting one dimensional smooth factor interactions |
| plot.gamViz | Basic GAM plotting |
| plot.mgamViz | Plotting multiple quantile GAMs |
| plot.mgcv.smooth.1D | Plotting one dimensional smooth effects |
| plot.mgcv.smooth.2D | Plotting two dimensional smooth effects |
| plot.mgcv.smooth.MD | Plotting slice of higher-dimensional smooth effects |
| plot.mrf.smooth | Plotting Markov random field smooths |
| plot.multi.mgcv.smooth.1D | Plotting one dimensional smooth effects |
| plot.multi.mgcv.smooth.2D | Plotting two dimensional smooth effects |
| plot.multi.ptermFactor | Plotting factor or logical parametric effects |
| plot.multi.ptermInteraction | Plotting parametric interactions |
| plot.multi.ptermLogical | Plotting factor or logical parametric effects |
| plot.multi.ptermNumeric | Plotting numeric parametric effects |
| plot.multi.random.effect | Plotting random effects |
| plot.nested1D | Plotting one dimensional nested effects |
| plot.ptermFactor | Plotting factor or logical parametric effects |
| plot.ptermInteraction | Plotting parametric interactions |
| plot.ptermLogical | Plotting factor or logical parametric effects |
| plot.ptermMatrixNumeric | Plotting numeric parametric effects |
| plot.ptermNumeric | Plotting numeric parametric effects |
| plot.random.effect | Plotting random effects |
| plot.sos.smooth | Plotting smooths on the sphere |
| plotDiff | Generic plotting of differences |
| plotDiff.mgcv.smooth.1D | Plotting differences between two 1D smooth effects |
| plotDiff.mgcv.smooth.2D | Plotting differences between two 2D smooth effects |
| plotDiff.sos.smooth | Plotting differences between two smooths on the sphere |
| plotRGL | Generic RGL plotting function |
| plotRGL.mgcv.smooth.2D | Visualizing 2D smooth effects in 3D |
| plotRGL.mgcv.smooth.MD | Visualizing a 2D slice of a smooth effects in 3D |
| plotSlice | Plotting sequence of slices of 2D smooth effect |
| postSim | Posterior simulation from a GAM object |
| print.checkGam | Printing the output of check.gamViz |
| print.plotGam | Printing the output of plot.gamViz |
| print.plotSmooth | Printing plots of smooth effects |
| print.qqGam | Printing the output of qq.gamViz |
| pterm | Extracting parametric effects from a GAM model |
| qgamV | Fit a QGAM model and get a gamViz object |
| Generic QQ plots | |
| qq.gamViz | QQ plots for gam model residuals |
| qqline | Quantile-Quantile Plots |
| qqnorm | Quantile-Quantile Plots |
| qqplot | Quantile-Quantile Plots |
| qqplots | Quantile-Quantile Plots |
| residuals.gamViz | Generalized Additive Model residuals |
| shine | Generic shine function |
| shine.qqGam | Shiny QQ-plots for GAMs |
| simulate.gam | Simulating responses from a GAM object |
| sm | Extracting a smooth effect from a GAM model |
| zoom | Generic zooming function |
| zoom.qqGam | Efficiently zooming on GAM QQ-plots |
| zto1 | Constructing a decreasing function from (0,1) to (0,1) |