CRAN Package Check Results for Package OncoBayes2

Last updated on 2025-03-20 11:53:42 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-0 210.40 566.86 777.26 OK
r-devel-linux-x86_64-debian-gcc 0.9-1 180.85 192.10 372.95 OK
r-devel-linux-x86_64-fedora-clang 0.9-1 802.57 OK
r-devel-linux-x86_64-fedora-gcc 0.9-1 827.70 OK
r-devel-macos-arm64 0.9-1 186.00 OK
r-devel-macos-x86_64 0.9-1 609.00 OK
r-devel-windows-x86_64 0.9-1 188.00 291.00 479.00 OK
r-patched-linux-x86_64 0.9-1 237.65 264.75 502.40 OK
r-release-linux-x86_64 0.9-1 236.86 260.42 497.28 NOTE
r-release-macos-arm64 0.9-1 183.00 NOTE
r-release-macos-x86_64 0.9-1 707.00 NOTE
r-release-windows-x86_64 0.9-1 178.00 292.00 470.00 NOTE
r-oldrel-macos-arm64 0.9-1 172.00 ERROR
r-oldrel-macos-x86_64 0.9-1 566.00 NOTE
r-oldrel-windows-x86_64 0.9-0 246.00 940.00 1186.00 NOTE

Check Details

Version: 0.9-1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘cmdstanr’ Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.9-1
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.9-1
Check: installed package size
Result: NOTE installed size is 62.9Mb sub-directories of 1Mb or more: libs 61.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.9-1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown Quitting from ./settings-sampling.txt:1-16 [SETTINGS-sampling] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'systemfonts' --- Backtrace: ▆ 1. └─tools:::.buildOneVignette(...) 2. ├─base::tryCatch(...) 3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 6. └─engine$weave(file, quiet = quiet, encoding = enc) 7. └─knitr:::vweave_rmarkdown(...) 8. └─rmarkdown::render(...) 9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 10. └─knitr:::process_file(text, output) 11. ├─xfun:::handle_error(...) 12. ├─base::withCallingHandlers(...) 13. └─knitr:::process_group(group) 14. └─knitr:::call_block(x) 15. └─base::lapply(sc_split(params$child), knit_child, options = block$params) 16. └─knitr (local) FUN(X[[i]], ...) 17. └─knitr::knit(..., tangle = opts_knit$get("tangle"), envir = envir) 18. └─knitr:::process_file(text, output) 19. ├─xfun:::handle_error(...) 20. ├─base::withCallingHandlers(...) 21. └─knitr:::process_group(group) 22. └─knitr:::call_block(x) 23. └─knitr:::block_exec(params) 24. └─knitr:::eng_r(options) 25. └─knitr:::chunk_device(options, keep != "none", tmp.fig) 26. ├─base::do.call(...) 27. └─knitr (local) `<fn>`(...) 28. └─base::loadNamespace("ragg") 29. ├─base::namespaceImportFrom(...) 30. │ └─base::asNamespace(ns) 31. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 32. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 33. └─base (local) withOneRestart(expr, restarts[[1L]]) 34. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Quitting from introduction.Rmd:14-15 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'systemfonts' --- Backtrace: ▆ 1. └─tools:::.buildOneVignette(...) 2. ├─base::tryCatch(...) 3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 6. └─engine$weave(file, quiet = quiet, encoding = enc) 7. └─knitr:::vweave_rmarkdown(...) 8. └─rmarkdown::render(...) 9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 10. └─knitr:::process_file(text, output) 11. ├─xfun:::handle_error(...) 12. ├─base::withCallingHandlers(...) 13. └─knitr:::process_group(group) 14. └─knitr:::call_block(x) 15. └─base::lapply(sc_split(params$child), knit_child, options = block$params) 16. └─knitr (local) FUN(X[[i]], ...) 17. └─knitr::knit(..., tangle = opts_knit$get("tangle"), envir = envir) 18. └─knitr:::process_file(text, output) 19. ├─xfun:::handle_error(...) 20. ├─base::withCallingHandlers(...) 21. └─knitr:::process_group(group) 22. └─knitr:::call_block(x) 23. └─knitr:::block_exec(params) 24. └─knitr:::eng_r(options) 25. └─knitr:::chunk_device(options, keep != "none", tmp.fig) 26. ├─base::do.call(...) 27. └─knitr (local) `<fn>`(...) 28. └─base::loadNamespace("ragg") 29. ├─base::namespaceImportFrom(...) 30. │ └─base::asNamespace(ns) 31. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 32. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 33. └─base (local) withOneRestart(expr, restarts[[1L]]) 34. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'introduction.Rmd' failed with diagnostics: there is no package called 'systemfonts' --- failed re-building ‘introduction.Rmd’ --- re-building ‘map_approach.Rmd’ using rmarkdown Quitting from ./settings-sampling.txt:1-16 [SETTINGS-sampling] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'systemfonts' --- Backtrace: ▆ 1. └─tools:::.buildOneVignette(...) 2. ├─base::tryCatch(...) 3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 6. └─engine$weave(file, quiet = quiet, encoding = enc) 7. └─knitr:::vweave_rmarkdown(...) 8. └─rmarkdown::render(...) 9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 10. └─knitr:::process_file(text, output) 11. ├─xfun:::handle_error(...) 12. ├─base::withCallingHandlers(...) 13. └─knitr:::process_group(group) 14. └─knitr:::call_block(x) 15. └─base::lapply(sc_split(params$child), knit_child, options = block$params) 16. └─knitr (local) FUN(X[[i]], ...) 17. └─knitr::knit(..., tangle = opts_knit$get("tangle"), envir = envir) 18. └─knitr:::process_file(text, output) 19. ├─xfun:::handle_error(...) 20. ├─base::withCallingHandlers(...) 21. └─knitr:::process_group(group) 22. └─knitr:::call_block(x) 23. └─knitr:::block_exec(params) 24. └─knitr:::eng_r(options) 25. └─knitr:::chunk_device(options, keep != "none", tmp.fig) 26. ├─base::do.call(...) 27. └─knitr (local) `<fn>`(...) 28. └─base::loadNamespace("ragg") 29. ├─base::namespaceImportFrom(...) 30. │ └─base::asNamespace(ns) 31. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 32. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 33. └─base (local) withOneRestart(expr, restarts[[1L]]) 34. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Quitting from map_approach.Rmd:19-20 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'systemfonts' --- Backtrace: ▆ 1. └─tools:::.buildOneVignette(...) 2. ├─base::tryCatch(...) 3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 6. └─engine$weave(file, quiet = quiet, encoding = enc) 7. └─knitr:::vweave_rmarkdown(...) 8. └─rmarkdown::render(...) 9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 10. └─knitr:::process_file(text, output) 11. ├─xfun:::handle_error(...) 12. ├─base::withCallingHandlers(...) 13. └─knitr:::process_group(group) 14. └─knitr:::call_block(x) 15. └─base::lapply(sc_split(params$child), knit_child, options = block$params) 16. └─knitr (local) FUN(X[[i]], ...) 17. └─knitr::knit(..., tangle = opts_knit$get("tangle"), envir = envir) 18. └─knitr:::process_file(text, output) 19. ├─xfun:::handle_error(...) 20. ├─base::withCallingHandlers(...) 21. └─knitr:::process_group(group) 22. └─knitr:::call_block(x) 23. └─knitr:::block_exec(params) 24. └─knitr:::eng_r(options) 25. └─knitr:::chunk_device(options, keep != "none", tmp.fig) 26. ├─base::do.call(...) 27. └─knitr (local) `<fn>`(...) 28. └─base::loadNamespace("ragg") 29. ├─base::namespaceImportFrom(...) 30. │ └─base::asNamespace(ns) 31. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 32. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 33. └─base (local) withOneRestart(expr, restarts[[1L]]) 34. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'map_approach.Rmd' failed with diagnostics: there is no package called 'systemfonts' --- failed re-building ‘map_approach.Rmd’ SUMMARY: processing the following files failed: ‘introduction.Rmd’ ‘map_approach.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-arm64

Version: 0.9-0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: 'cmdstanr' Flavor: r-oldrel-windows-x86_64

Version: 0.9-0
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavor: r-oldrel-windows-x86_64