DAISIEprep: Extracts Phylogenetic Island Community Data from Phylogenetic Trees

Extracts colonisation and branching times of island species to be used for analysis in the R package 'DAISIE'. It uses phylogenetic and endemicity data to extract the separate island colonists and store them.

Version:	1.0.0
Depends:	R (≥ 4.0)
Imports:	methods, ape, phylobase, ggplot2, scales, ggtree, DAISIE, castor, tibble, rlang
Suggests:	testthat (≥ 3.0.0), knitr, rmarkdown, covr, diversitree, corHMM, tidyr, dplyr, ggimage
Published:	2024-12-18
DOI:	10.32614/CRAN.package.DAISIEprep
Author:	Joshua W. Lambert [aut, cre], Luis Valente [aut], Pedro Santos Neves [aut], Lizzie Roeble [aut], Theo Pannetier [aut]
Maintainer:	Joshua W. Lambert <j.w.l.lambert at rug.nl>
BugReports:	https://github.com/joshwlambert/DAISIEprep/issues
License:	GPL (≥ 3)
URL:	https://github.com/joshwlambert/DAISIEprep, https://joshwlambert.github.io/DAISIEprep/
NeedsCompilation:	no
Materials:	README NEWS
CRAN checks:	DAISIEprep results

Documentation:

Reference manual:	DAISIEprep.pdf
Vignettes:	Forcing non-endemic singletons: solutions and limitations (source, R code) Extracting species with multiple tips in the phylogeny (source, R code) Performance (source, R code) Sensitivity (source, R code) DAISIEprep Tutorial (source, R code)

Downloads:

Package source:	DAISIEprep_1.0.0.tar.gz
Windows binaries:	r-devel: DAISIEprep_1.0.0.zip, r-release: DAISIEprep_1.0.0.zip, r-oldrel: DAISIEprep_1.0.0.zip
macOS binaries:	r-release (arm64): DAISIEprep_1.0.0.tgz, r-oldrel (arm64): DAISIEprep_1.0.0.tgz, r-release (x86_64): DAISIEprep_1.0.0.tgz, r-oldrel (x86_64): DAISIEprep_1.0.0.tgz
Old sources:	DAISIEprep archive

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