GeneralizedUmatrix: Credible Visualization for Two-Dimensional Projections of Data
Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018] <doi:10.1007/978-3-658-20540-9>. This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is derived from the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <doi:10.1007/978-3-658-20540-9> and the main algorithm called simplified self-organizing map for dimensionality reduction methods is published in <doi:10.1016/j.mex.2020.101093>.
| Version: | 1.3.1 |
| Depends: | R (≥ 3.0) |
| Imports: | Rcpp (≥ 1.0.8), RcppParallel (≥ 5.1.4), ggplot2 |
| LinkingTo: | Rcpp, RcppArmadillo, RcppParallel |
| Suggests: | DataVisualizations, rgl, grid, mgcv, png, reshape2, fields, ABCanalysis, plotly, deldir, methods, knitr (≥ 1.12), rmarkdown (≥ 0.9) |
| Published: | 2025-01-29 |
| DOI: | 10.32614/CRAN.package.GeneralizedUmatrix |
| Author: | Michael Thrun 
[aut, cre, cph],
Felix Pape [ctb, ctr],
Tim Schreier [ctb, ctr],
Luis Winckelman [ctb, ctr],
Quirin Stier
[ctb, ctr],
Alfred Ultsch [ths] |
| Maintainer: | Michael Thrun <m.thrun at gmx.net> |
| BugReports: | https://github.com/Mthrun/GeneralizedUmatrix/issues |
| License: | GPL-3 |
| URL: | https://www.deepbionics.org |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make, pandoc (>=1.12.3, needed for vignettes) |
| Citation: | GeneralizedUmatrix citation info |
| Materials: | README |
| CRAN checks: | GeneralizedUmatrix results |
Documentation:
| Reference manual: | GeneralizedUmatrix.pdf |
| Vignettes: |
Uncovering High-Dimensional Structures of Projections from Dimensionality Reduction Methods (source, R code) |
Downloads:
| Package source: | GeneralizedUmatrix_1.3.1.tar.gz |
| Windows binaries: | r-devel: GeneralizedUmatrix_1.3.1.zip, r-release: GeneralizedUmatrix_1.3.1.zip, r-oldrel: GeneralizedUmatrix_1.3.1.zip |
| macOS binaries: | r-devel (arm64): GeneralizedUmatrix_1.3.1.tgz, r-release (arm64): GeneralizedUmatrix_1.3.1.tgz, r-oldrel (arm64): GeneralizedUmatrix_1.3.1.tgz, r-devel (x86_64): GeneralizedUmatrix_1.3.1.tgz, r-release (x86_64): GeneralizedUmatrix_1.3.1.tgz, r-oldrel (x86_64): GeneralizedUmatrix_1.3.1.tgz |
| Old sources: | GeneralizedUmatrix archive |
Reverse dependencies:
| Reverse imports: | DatabionicSwarm, ProjectionBasedClustering |
| Reverse suggests: | FCPS |
Linking:
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