diemr: Diagnostic Index Expectation Maximisation in R
Likelihood-based genome polarisation finds which alleles of genomic markers belong to which side of the barrier. Co-estimates which individuals belong to either side of the barrier and barrier strength. Uses expectation maximisation in likelihood framework. The method is described in Baird et al. (2023) <doi:10.1111/2041-210X.14010>.
| Version: | 1.4.2 |
| Imports: | zoo, vcfR |
| Suggests: | testthat (≥ 3.0.0), knitr, rmarkdown |
| Published: | 2024-12-02 |
| DOI: | 10.32614/CRAN.package.diemr |
| Author: | Natalia Martinkova
 [aut, cre],
Stuart Baird
[aut] |
| Maintainer: | Natalia Martinkova <martinkova at ivb.cz> |
| BugReports: | https://github.com/StuartJEBaird/diem/issues |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Citation: | diemr citation info |
| Materials: | NEWS |
| CRAN checks: | diemr results |
Documentation:
| Reference manual: | diemr.pdf |
| Vignettes: |
Importing data for genome polarisation (source, R code) Understanding genome polarisation output files (source, R code) diemr: Diagnostic index expectation maximisation in R (source, R code) |
Downloads:
| Package source: | diemr_1.4.2.tar.gz |
| Windows binaries: | r-devel: diemr_1.4.2.zip, r-release: diemr_1.4.2.zip, r-oldrel: diemr_1.4.2.zip |
| macOS binaries: | r-release (arm64): diemr_1.4.2.tgz, r-oldrel (arm64): diemr_1.4.2.tgz, r-release (x86_64): diemr_1.4.2.tgz, r-oldrel (x86_64): diemr_1.4.2.tgz |
| Old sources: | diemr archive |
Linking:
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