Last updated on 2025-07-06 08:50:08 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/127s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.482, system: 0.042, elapsed: 1.878 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.070, system: 0.119, elapsed: 11.408 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.015, elapsed: 0.306 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.646, system: 0.178, elapsed: 4.600 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.003, elapsed: 0.170 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.076, system: 0.380, elapsed: 19.015 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.443, system: 0.031, elapsed: 1.875 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.121, system: 0.082, elapsed: 12.755 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.012, elapsed: 0.264 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.823, system: 0.172, elapsed: 6.476 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.004, elapsed: 0.341 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.291, system: 0.322, elapsed: 22.496 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.560, system: 0.034, elapsed: 2.545 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.080, system: 0.081, elapsed: 15.573 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.011, elapsed: 0.342 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.754, system: 0.189, elapsed: 6.546 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.004, elapsed: 0.248 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.154, system: 0.230, elapsed: 1.231 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.525, system: 0.571, elapsed: 27.464 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.487, system: 0.029, elapsed: 2.124 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.009, system: 0.075, elapsed: 20.963 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.013, elapsed: 0.557 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.839, system: 0.181, elapsed: 9.423 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.004, elapsed: 0.368 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.369, system: 0.465, elapsed: 15.758 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.728, system: 0.799, elapsed: 50.611 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [77s/105s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.517, system: 0.049, elapsed: 1.794 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.521, system: 0.062, elapsed: 9.043 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.169, system: 0.012, elapsed: 0.181 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.234, system: 0.158, elapsed: 3.587 seconds]
Computing values for grid cells...
... done. [user: 0.156, system: 0.003, elapsed: 0.199 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.100, system: 0.302, elapsed: 15.448 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.496, system: 0.035, elapsed: 1.930 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.107, system: 0.080, elapsed: 14.992 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.012, elapsed: 0.297 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.599, system: 0.176, elapsed: 6.261 seconds]
Computing values for grid cells...
... done. [user: 0.156, system: 0.003, elapsed: 0.298 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.088, system: 0.328, elapsed: 24.645 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.564, system: 0.032, elapsed: 2.735 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.884, system: 0.045, elapsed: 13.950 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.011, elapsed: 0.291 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.445, system: 0.163, elapsed: 5.072 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.004, elapsed: 0.255 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.069, system: 0.259, elapsed: 0.932 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.929, system: 0.536, elapsed: 24.266 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.464, system: 0.028, elapsed: 2.098 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.978, system: 0.074, elapsed: 12.800 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.013, elapsed: 0.241 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.554, system: 0.210, elapsed: 4.640 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.008, elapsed: 0.225 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.138, system: 0.572, elapsed: 13.399 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.132, system: 0.940, elapsed: 34.282 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64